Identification of fish blood cell populations on the basis of a convolutionary neural network for compiling a leukogram
https://doi.org/10.26897/0021-342X-2023-4-110-125
Abstract
In aquaculture, physiological assessment is required to monitor the health status of fish. Blood is the most responsive system in the organism of hydrobionts to changes in external factors. The study of hematological parameters of fish allows for early diagnosis of diseases, working out the technological mode of breeding and rearing, and selection. The typing of cells in circulating fluids is important for compiling hemocytic and leukocyte formulas characterizing the cellular component of the organism’s immune response.
In the present study, convolutional neural network models are developed to classify blood cells of carp and sturgeon fish. The quality of the models is estimated based on the metrics Accuracy and Precision, Recall, F1 with macro-averaging.
Based on the processing of blood images, 1104 images of blood cells of carp and sturgeon fish were prepared, including 15 cell populations: hemohistoblasts, myeloblasts, promyelocytes, myelocytes, metamyelocytes, rod-shaped neutrophils, segmented neutrophils, eosinophils, basophils, monocytes, lymphocytes, erythroblasts, normoblasts, mature erythrocytes, and platelets.
Models of a convolutional neural network have been developed to recognize populations of blood cell elements (erythrocytes, leukocytes, platelets) of carp and sturgeon fish. The models were trained on 80% of the prepared images, avoiding the problem of overtraining, as evidenced by the constructed graphs of the loss function (sparse categorical cross entropy) and accuracy during the learning process.
The constructed models make it possible to recognize blood cells of carp fish with an accuracy of 75.0% (metric F1 with macro-averaging is 0.570) and blood cells of sturgeon fish with an accuracy of 76.6% (F1 with macro-averaging is 0.664).
About the Authors
G. I. ProninaRussian Federation
Galina I. Pronina, DSc (Bio), Associate Professor, Professor of the Department of Aquaculture and Beekeeping
49, Timiryazevskaya Str., Moscow, 127434
D. V. Bykov
Denis V. Bykov, Assistant of the Department of Statistics and Cybernetics
49, Timiryazevskaya Str., Moscow, 127434
A. V. Ukolova
Anna V. Ukolova, CSc (Econ), Associate Professor, Acting Head of the Department of Statistics and Cybernetics
49, Timiryazevskaya Str., Moscow, 127434
A. E. Ul’yankin
Aleksandr E. Ul’yankin, Assistant of the Department of Statistics and Cybernetics
49, Timiryazevskaya Str., Moscow, 127434
A. N. Karasev
Andrey N. Karasev, 3rd-year undergraduate student
49, Timiryazevskaya Str., Moscow, 127434
M. A. Tutrikova
Maria A. Tutrikova, 3rd-year undergraduate student
49, Timiryazevskaya Str., Moscow, 127434
M. A. Akimushkina
Magdalina A. Akimushkina, 3rd-year undergraduate student
49, Timiryazevskaya Str., Moscow, 127434
K. A. Kanaeva
Ksenia A. Kanaeva, 3rd-year undergraduate student
49, Timiryazevskaya Str., Moscow, 127434
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Supplementary files
Review
For citations:
Pronina G.I., Bykov D.V., Ukolova A.V., Ul’yankin A.E., Karasev A.N., Tutrikova M.A., Akimushkina M.A., Kanaeva K.A. Identification of fish blood cell populations on the basis of a convolutionary neural network for compiling a leukogram. IZVESTIYA OF TIMIRYAZEV AGRICULTURAL ACADEMY. 2023;1(4):110-125. (In Russ.) https://doi.org/10.26897/0021-342X-2023-4-110-125