<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Publishing DTD v1.3 20210610//EN" "JATS-journalpublishing1-3.dtd">
<article article-type="research-article" dtd-version="1.3" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xml:lang="ru"><front><journal-meta><journal-id journal-id-type="publisher-id">izvestiiatimacad</journal-id><journal-title-group><journal-title xml:lang="ru">Известия Тимирязевской сельскохозяйственной академии</journal-title><trans-title-group xml:lang="en"><trans-title>IZVESTIYA OF TIMIRYAZEV AGRICULTURAL ACADEMY</trans-title></trans-title-group></journal-title-group><issn pub-type="ppub">0021-342X</issn><publisher><publisher-name>ФГБОУ ВО РГАУ-МСХА имени К.А. Тимирязева</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="doi">10.26897/0021-342X-2024-2-5-24</article-id><article-id custom-type="elpub" pub-id-type="custom">izvestiiatimacad-571</article-id><article-categories><subj-group subj-group-type="heading"><subject>Research Article</subject></subj-group><subj-group subj-group-type="section-heading" xml:lang="ru"><subject>АГРОХИМИЯ, ПОЧВОВЕДЕНИЕ, ЭКОЛОГИЯ</subject></subj-group><subj-group subj-group-type="section-heading" xml:lang="en"><subject>AGROCHEMISTRY, SOIL SCIENCE AND ECOLOGY</subject></subj-group></article-categories><title-group><article-title>Оценка длительного воздействия бессменного выращивания различных сельскохозяйственных культур  на микробные сообщества почвы</article-title><trans-title-group xml:lang="en"><trans-title>Evaluation of the long-term effects of the permanent cropping on soil microbial communities</trans-title></trans-title-group></title-group><contrib-group><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Альсаед</surname><given-names>Н.</given-names></name><name name-style="western" xml:lang="en"><surname>Alsayed</surname><given-names>N.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Альсаед Нур - соискатель кафедры микробиологии и иммунологии, РГАУ-МСХА имени К.А. Тимирязева.</p></bio><bio xml:lang="en"><p>Nour Alsayed - Applicant at the Department of Microbiology and Immunology.</p><p>49 Timiryazevskaya St., Moscow, 127550</p></bio><email xlink:type="simple">nooranooranooa92@gmail.com</email><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Селицкая</surname><given-names>О. В.</given-names></name><name name-style="western" xml:lang="en"><surname>Selitskaya</surname><given-names>O. V.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Селицкая Ольга Валентиновна - канд. биол. наук, доцент, доцент кафедры микробиологии и иммунологии, РГАУ-МСХА имени К.А. Тимирязева</p></bio><bio xml:lang="en"><p>Olga V. Selitskaya - CSc (Bio), Associate Professor, Associate Professor at the Department of Microbiology and Immunology.</p><p>49 Timiryazevskaya St., Moscow, 127550</p></bio><email xlink:type="simple">oselitskaya@rgau-msha.ru</email><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Поздняков</surname><given-names>Л. А.</given-names></name><name name-style="western" xml:lang="en"><surname>Pozdnyakov</surname><given-names>L. A.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Поздняков Лев Анатольевич - канд. биол. наук, доцент, доцент кафедры биологии почв МГУ имени М.В. Ломоносова.</p></bio><bio xml:lang="en"><p>Lev A. Pozdnyakov - CSc (Bio), Associate Professor, Associate Professor at the Department of Soil Biology.</p><p>1 Leninskie gory, Moscow, 119991</p></bio><email xlink:type="simple">apl-223@mail.ru</email><xref ref-type="aff" rid="aff-2"/></contrib><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Заверткин</surname><given-names>И. А.</given-names></name><name name-style="western" xml:lang="en"><surname>Zavertkin</surname><given-names>I. A.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Заверткин Игорь Анатольевич - канд. с.-х. наук, доцент, и.о. заведующего кафедрой земледелия и методики опытного дела, РГАУ-МСХА имени К.А. Тимирязева</p></bio><bio xml:lang="en"><p>Igor A. Zavertkin - CSc (Agr), Associate Professor, Acting Head of the Department of Agriculture and Experimental Methodology.</p><p>49 Timiryazevskaya St., Moscow, 127550</p></bio><email xlink:type="simple">izavyortkin@rgau-msha.ru</email><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Шубина</surname><given-names>Е. А.</given-names></name><name name-style="western" xml:lang="en"><surname>Shubina</surname><given-names>E. A.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Шубина Екатерина Александровна - студент, РГАУ-МСХА имени К.А. Тимирязева</p></bio><bio xml:lang="en"><p>Ekaterina A. Shubina - Student.</p><p>49 Timiryazevskaya St., Moscow, 127550</p></bio><email xlink:type="simple">ketshu@mail.ru</email><xref ref-type="aff" rid="aff-1"/></contrib></contrib-group><aff-alternatives id="aff-1"><aff xml:lang="ru"><institution>Российский государственный аграрный университет – МСХА имени К.А. Тимирязева</institution><country>Россия</country></aff><aff xml:lang="en"><institution>Russian State Agrarian University – Moscow Timiryazev Agricultural Academy</institution><country>Russian Federation</country></aff></aff-alternatives><aff-alternatives id="aff-2"><aff xml:lang="ru"><institution>Московский государственный университет имени М.В. Ломоносова</institution><country>Россия</country></aff><aff xml:lang="en"><institution>Lomonosov Moscow State University</institution><country>Russian Federation</country></aff></aff-alternatives><pub-date pub-type="collection"><year>2024</year></pub-date><pub-date pub-type="epub"><day>09</day><month>05</month><year>2024</year></pub-date><volume>0</volume><issue>2</issue><fpage>5</fpage><lpage>24</lpage><permissions><copyright-statement>Copyright &amp;#x00A9; Альсаед Н., Селицкая О.В., Поздняков Л.А., Заверткин И.А., Шубина Е.А., 2024</copyright-statement><copyright-year>2024</copyright-year><copyright-holder xml:lang="ru">Альсаед Н., Селицкая О.В., Поздняков Л.А., Заверткин И.А., Шубина Е.А.</copyright-holder><copyright-holder xml:lang="en">Alsayed N., Selitskaya O.V., Pozdnyakov L.A., Zavertkin I.A., Shubina E.A.</copyright-holder><license xml:lang="ru" license-type="creative-commons-attribution" xlink:href="https://creativecommons.org/licenses/by/4.0/" xlink:type="simple"><license-p>Данная работа распространяется под лицензией Creative Commons Attribution 4.0.</license-p></license><license xml:lang="en" license-type="creative-commons-attribution" xlink:href="https://creativecommons.org/licenses/by/4.0/" xlink:type="simple"><license-p>This work is licensed under a Creative Commons Attribution 4.0 License.</license-p></license></permissions><self-uri xlink:href="https://izvestiia.timacad.ru/jour/article/view/571">https://izvestiia.timacad.ru/jour/article/view/571</self-uri><abstract><p>Проведены исследования почвенных микробных сообществ под разными сельскохозяйственными растениями (лен, клевер, ячмень, картофель, озимая рожь), выращиваемыми в бессменных посевах и севообороте. Изучено влияние бессменного посева и севооборота на таксономический профиль прокариотической и грибной составляющих почвенного микробиома. Произведена оценка влияния бессменного выращивания культур и севооборота на фоне без внесения минеральных и органических удобрений на интенсивность метаболизма и устойчивость почвенной биоты. Объектом исследований служил Длительный опыт Российского государственного аграрного университета – МСХА имени К.А. Тимирязева, заложенный в 1912 г. профессором А.Г. Дояренко. Показано, что у грибов наибольшее значение операционной таксономической единицы (ОТЕ) было в почве под паром и севооборотом. Для прокариот, напротив, количество ОТЕ было самым низким в варианте севооборота. Установлено, что аскомицеты являются доминирующим таксоном грибов во всех исследованных образцах. У прокариот доминировали Proteobacteria и Acidobacteriota, далее – Actinobacteriota и Firmicutes, и в меньшей степени представлены Chloroflexi. Среди архей преобладал филум Crenarcheota. Показано, что бессменное выращивание культур в целом негативно сказывается на функционировании микробного сообщества. При оптимальном значении метаболического коэффициента 0,2 при монокультуре они достигали 0,6. Устойчивость микробного сообщества почвы снижена в результате бессменного выращивания картофеля, льна и клевера на фоне без внесения органических и минеральных удобрений, а также в варианте «вечного пара». Особенно неблагоприятные условия были отмечены при монокультуре картофеля. Бессменное выращивание зерновых, особенно озимой ржи, не ведет к существенному снижению активности почвенной биоты и устойчивости микробных сообществ почв. Севооборот позволяет оптимизировать микробиологические процессы в почве и повысить устойчивость микробного сообщества.</p></abstract><trans-abstract xml:lang="en"><p>The study of soil microbial communities under different agricultural crops (flax, clover, barley, potato, winter rye) grown in permanent cropping and crop rotation was carried out. The effect of permanent cropping and crop rotation on the taxonomic profile of the prokaryotic and fungal components of the soil microbiome was studied. The effect of permanent cropping and crop rotation on the metabolic intensity and stability of soil biota in the absence of mineral and organic fertilisers was assessed. The subject of the research was the long-term experience established in 1912 by Professor A.G. Doyarenko at the Russian State Agrarian University – Moscow Timiryazev Agricultural Academy, founded in 1912 by Professor A.G. Doyarenko. It was shown that the highest OUT (operational taxonomic units) values for fungi were found in soils under fallow and crop rotation. For prokaryotes, however, the crop rotation variant had the lowest number of OTUs. Ascomycetes were found to be the dominant fungal taxon in all samples studied. Prokaryotes were dominated by Proteobacteria and Acidobacteriota, followed by Actinobacteriota and Firmicutes, and Chloroflexi were represented to a lesser extent. Among the archaea, the Crenarcheota phylum was dominant. It was shown that continuous cultivation of crops generally has a negative effect on the functioning of the microbial community. With an optimal metabolic coefficient of 0.2 in monoculture, they reached 0.6. The sustainability of the soil microbial community is reduced by the continuous cultivation of potatoes, flax and clover without organic and mineral fertilizers, as well as by the “perpetual fallow” option. Particularly unfavorable conditions were found in potato monoculture. Continuous cultivation of cereals, especially winter rye, does not lead to a significant decrease in the activity of soil biota and the stability of soil microbial communities. Crop rotation makes it possible to optimize microbiological processes in the soil and to increase the stability of the soil microbial community.</p></trans-abstract><kwd-group xml:lang="ru"><kwd>Биологическое разнообразие</kwd><kwd>монокультура</kwd><kwd>бессменные посевы</kwd><kwd>севооборот</kwd><kwd>почва</kwd><kwd>грибы</kwd><kwd>прокариоты</kwd><kwd>дыхание</kwd><kwd>устойчивость</kwd></kwd-group><kwd-group xml:lang="en"><kwd>biodiversity</kwd><kwd>monoculture</kwd><kwd>permanent crops</kwd><kwd>crop rotation</kwd><kwd>soil</kwd><kwd>fungi</kwd><kwd>prokaryotes</kwd><kwd>respiration</kwd><kwd>sustainability</kwd></kwd-group></article-meta></front><back><ref-list><title>References</title><ref id="cit1"><label>1</label><citation-alternatives><mixed-citation xml:lang="ru">Аллелопатия растений и почвоутомление: Избранные труды / А.М. Гродзинский; Редкол.: В.Д. Романенко (отв. ред.) и др. / АН УССР. Центральный республиканский ботанический сад. – Киев: Наукова думка, 1991. – 432 с.</mixed-citation><mixed-citation xml:lang="en">Grodzinskiy A.M. Plant allelopathy and soil fatigue: selectas. Ed. by V.D. Romanenko (chief editor) et al. Academy of Sciences of the Ukrainian SSR. Central Republican Botanical Garden. Kiev, Ukrain: Nauk. dumka, 1991:432. (In Russ.)</mixed-citation></citation-alternatives></ref><ref id="cit2"><label>2</label><citation-alternatives><mixed-citation xml:lang="ru">Ананьева Н.Д. Микробиологические аспекты самоочищения и устойчивости почв: монография. – М.: Наука, 2003. – 223 с.</mixed-citation><mixed-citation xml:lang="en">Anan’eva N.D. Microbiological aspects of self-purification and soil stability. Moscow, Russia: Nauka, 2003:223. (Iin Russ.)</mixed-citation></citation-alternatives></ref><ref id="cit3"><label>3</label><citation-alternatives><mixed-citation xml:lang="ru">Антонов А.А., Баранова Е.Н., Гулевич А.А., Куренина Л.В., Ванькова А.А., Ралдугина Г.Н. Модификация микробного сообщества ризосферы трансгенных растений томата с геном синтеза глицинбетаина // Известия ТСХА. – 2020. – № 5. – С. 18–29.</mixed-citation><mixed-citation xml:lang="en">Antonov A.A., Baranova E.N., Gulevich A.A., Kurenina L.V. et al. Modified composition of microbial community in the rhizosphere of transgenic tomato plants with a glycine betaine syntesis gene. Izvestiya of Timiryazev Agricultural Academy (TAA). 2020;(5):18–29. (In Russ.)</mixed-citation></citation-alternatives></ref><ref id="cit4"><label>4</label><citation-alternatives><mixed-citation xml:lang="ru">Благодатская Е.В., Ананьева Н.Д. Оценка устойчивости микробных сообществ в процессе разложения поллютантов в почве // Почвоведение. – 1996. – № 11. – С. 1341–1346.</mixed-citation><mixed-citation xml:lang="en">Blagodatskaya E.V., Anan’eva N.D. Assessment of the resistance of soil microbial communities to pollutants. Eurasian Soil Science. 1996;11:1341–1346. (In Russ.)</mixed-citation></citation-alternatives></ref><ref id="cit5"><label>5</label><citation-alternatives><mixed-citation xml:lang="ru">Воробьева Л.И. Археи: учеб. пособие. – М.: Академкнига, 2007. – 447 с.</mixed-citation><mixed-citation xml:lang="en">Vorob’eva L.I. Archaea. Moscow, Russia: Akademkniga, 2007:447. (In Russ.)</mixed-citation></citation-alternatives></ref><ref id="cit6"><label>6</label><citation-alternatives><mixed-citation xml:lang="ru">Добровольский Г.В. Экологическая роль почвы в биосфере и в жизни человека // Доклады по экологическому почвоведению. – 2007. – Т. 2, № 6. – С. 1–16.</mixed-citation><mixed-citation xml:lang="en">Dobrovolskiy G.V. Ecological role of soil in the biosphere and in human life. Doklady po ekologicheskomu pochvovedeniyu. 2007;2(6):1–16. (In Russ.)</mixed-citation></citation-alternatives></ref><ref id="cit7"><label>7</label><citation-alternatives><mixed-citation xml:lang="ru">Доспехов Б.А., Кирюшин Б.Д. Плодородие почвы в условиях севооборота и бессменных культур // Сельское хозяйство за рубежом. – 1979. – № 11. – С. 2–7.</mixed-citation><mixed-citation xml:lang="en">Dospehov B.A., Kiryushin B.D. Soil fertility in conditions of crop rotation and permanent crops. S. kh. za rubezhom. 1979;11:2–7. (In Russ.)</mixed-citation></citation-alternatives></ref><ref id="cit8"><label>8</label><citation-alternatives><mixed-citation xml:lang="ru">Думова В.А., Першина Е.В., Мерзлякова Я.В., Круглов Ю.В., Андронов Е.Е. Основные тенденции в формировании почвенного микробного сообщества в условиях стационарного полевого опыта по данным высокопроизводительного секвенирования библиотек гена 16S-рРНК // Сельскохозяйственная биология. – 2013. – Т. 48, № 5. – С. 85–92.</mixed-citation><mixed-citation xml:lang="en">Dumova V.A., Pershina E.V., Merzlyakova Ya.V., Kruglov Yu.V., Andronov E.E. The main trends in dynamics of soil microbiom during a long-term field experiment as indicated by high throughput sequencing 16S-rRNA gene libraries. Agricultural Biology. 2013;48(5):85–92. (In Russ.)</mixed-citation></citation-alternatives></ref><ref id="cit9"><label>9</label><citation-alternatives><mixed-citation xml:lang="ru">Корвиго И.О., Першина Е.В., Иванова Е.А., Матюк Н.С., Савоськина О.А., Чирак Е.Л., Проворов Н.А., Андронов Е.Е. Оценка длительного воздействия агротехнических приемов и сельскохозяйственных культур на почвенные микробные сообщества // Микробиология. – 2016. – Т. 85, № 2. – С. 199–210.</mixed-citation><mixed-citation xml:lang="en">Corvigo I.O., Pershina E.V., Ivanova E.A., Chirak E.L. et al. Effect of long-term application of agrotechnical techniques and crops on soil microbial communities. Microbiology. 2016;85(2):199–210. (In Russ.)</mixed-citation></citation-alternatives></ref><ref id="cit10"><label>10</label><citation-alternatives><mixed-citation xml:lang="ru">Красильников А.К. Микроорганизмы почв и высшие растения. – М.: Изд-во АН СССР, 1958. – 466 с.</mixed-citation><mixed-citation xml:lang="en">Krasilnikov A.K. Soil microorganisms and higher plants. Moscow, USSR: Publishing House of the USSR Academy of Sciences, 1958:466. (In Russ.)</mixed-citation></citation-alternatives></ref><ref id="cit11"><label>11</label><citation-alternatives><mixed-citation xml:lang="ru">Роговая С.В., Елсукова Е.Ю., Ананьева Н.Д. Микробный компонент почв и его дыхательная активность в хвойных лесах северо-западного Приладожья // Вестник Санкт-Петербургского университета. Науки о земле. – 2016. – № 3. – С. 129–137.</mixed-citation><mixed-citation xml:lang="en">Rogovaia S.V., Elsukova E.Yu., Ananyeva N.D. Soil microbial component and its respiratory activity in coniferous forests of the Northwest Priladozhje area. Vestnik of Saint Petersburg University. Earth Sciences. 2016;3:129–137. (In Russ.)</mixed-citation></citation-alternatives></ref><ref id="cit12"><label>12</label><citation-alternatives><mixed-citation xml:lang="ru">Сорокин Н.Д. Микробиологический мониторинг нарушенных наземных экосистем Сибири // Известия Российской академии наук. Серия биологическая. – 2009. – № 6. – С. 728–733.</mixed-citation><mixed-citation xml:lang="en">Sorokin N.D. Microbiological monitoring of disturbed ground ecosystems of Siberia. Proceedings of the Russian Academy of Sciences. Biological Series. 2009;6:728–733. (In Russ.)</mixed-citation></citation-alternatives></ref><ref id="cit13"><label>13</label><citation-alternatives><mixed-citation xml:lang="ru">Сушко С.В., Ананьева Н.Д., Иващенко К.В., Кудеяров В.Н. Эмиссия СО2, микробная биомасса и базальное дыхание чернозема при различном землепользовании // Почвоведение. – 2019. – № 9. – С. 1081–1091.</mixed-citation><mixed-citation xml:lang="en">Sushko S.V., Anan’eva N.D., Ivashchenko K.V., Kudeyarov V.N. CO2 emission, microbial biomass and basal respiration of chernozem under different land uses. Eurasian Soil Science. 2019;9:1081–1091. (In Russ.)</mixed-citation></citation-alternatives></ref><ref id="cit14"><label>14</label><citation-alternatives><mixed-citation xml:lang="ru">Терехова В.А., Прудникова Е.В., Кулачкова С.А., Горленко М.В., Учанов П.В., Сушко С.В., Ананьева Н.Д. Микробиологические показатели агродерново-подзолистых почв разной гумусированности при внесении тяжелых металлов и углеродсодержащих препаратов // Почвоведение. – 2021. – № 3. – С. 372–384.</mixed-citation><mixed-citation xml:lang="en">Terekhova V.A., Prudnikova E.V., Kulachkova S.A., Gorlenko M.V. et al. Microbiological indicators of heavy metals and carbon-containing preparations to agrosoddy-podzolic soils differing in humus content. Eurasian Soil Science. 2021;3:372–384. (In Russ.)</mixed-citation></citation-alternatives></ref><ref id="cit15"><label>15</label><citation-alternatives><mixed-citation xml:lang="ru">Чернов Т.И., Тхакахова А.К., Лебедева М.П., Железова А.Д., Бгажба Н.А., Кутовая О.В. и др. Микробиомы контрастных по засолению почв солонцового комплекса Волго-Уральского междуречья // Почвоведение. – 2018. – № 9. – С. 1115–1124.</mixed-citation><mixed-citation xml:lang="en">Chernov T.I., Tkhakakhova A.K., Lebedeva M.P., Zhelezova A.D. et al. Microbiomes of the soils of solonetzic complex with contrasting salinization on the Volga–Ural interfluve. Eurasian Soil Science. 2018;9:1115–1124. (In Russ.)</mixed-citation></citation-alternatives></ref><ref id="cit16"><label>16</label><citation-alternatives><mixed-citation xml:lang="ru">Чирак Е.Л., Першина Е.В., Дольник А.С., Кутовая О.В., Василенко Е.С., Когут Б.М., Мерзлякова Я.В., Андронов Е.Е. Таксономическая структура микробных сообществ в почвах различных типов по данным высокопроизводительного секвенирования библиотек гена 16S-рРНК // Сельскохозяйственная биология. – 2013. – Т. 48, № 3. – С. 100–109.</mixed-citation><mixed-citation xml:lang="en">Chirak E.L., Pershina E.V., Dol’nik A.S., Kutovaya O.V. et al. Taxonomic structure of microbial association indifferent soils investigated by high-throughputsequencing of 16S-rRNA gene library. Agricultural Biology. 2013;48(3):100–109. (In Russ.)</mixed-citation></citation-alternatives></ref><ref id="cit17"><label>17</label><citation-alternatives><mixed-citation xml:lang="ru">Шумилова Л.П., Куимова Н.Г. Изучение микробного сообщества городских почв методом газовой хроматографии масс-спектрометрии // Бюллетень физиологии и патологии дыхания. – 2013. – № 50. – С. 121–125.</mixed-citation><mixed-citation xml:lang="en">Shumilova L.P., Kuimova N.G. The study of microbial association in city soils by the gas chromatography-mass spectrometry method. Bulletin Physiology and Pathology of Respiration. 2013;(50):121–125. (In Russ.)</mixed-citation></citation-alternatives></ref><ref id="cit18"><label>18</label><citation-alternatives><mixed-citation xml:lang="ru">Alvarez R., Alvarez R., Alvarez C.R., Lorenzo G. Carbon dioxide fluxes following tillage from a mollisol in the Argentine Rolling Pampa // Eur. J. Soil Biol. – 2001. – Т. 37. – С. 161–166. https://doi.org/10.1016/S1164-5563(01)01085-8.</mixed-citation><mixed-citation xml:lang="en">Alvarez R., Alvarez C.R., Lorenzo G. Carbon dioxide fluxes following tillage from a mollisol in the Argentine Rolling Pampa. Eur. J. Soil Biol. 2001;37:161–166. https://doi.org/10.1016/S1164-5563(01)01085-8</mixed-citation></citation-alternatives></ref><ref id="cit19"><label>19</label><citation-alternatives><mixed-citation xml:lang="ru">Balvanera P., Pfisterer A.B., Buchmann N., He J.S., Nakashizuka T., Raffaelli D., Schmid B. Quantifying the evidence for biodiversity effects on ecosystem functioning and services // Ecology letters. – 2006. – Т. 9, № 10. – С. 1146–1156.</mixed-citation><mixed-citation xml:lang="en">Balvanera P., Pfisterer A.B., Buchmann N., He J.S. et al. Quantifying the evidence for biodiversity effects on ecosystem functioning and services. Ecology Letters. 2006;9(10):1146–1156.</mixed-citation></citation-alternatives></ref><ref id="cit20"><label>20</label><citation-alternatives><mixed-citation xml:lang="ru">Bay G., Lee С., Chen С., Mahal N.K., Castellano M.J., Hofmockel K.S., Halverson L.J. Agricultural management affects the active rhizosphere bacterial community composition and nitrification // Msystems. 2021. – Т. 6, № 5. – С. e00651–21. Doi: 10.1128/mSystems.00651–21.</mixed-citation><mixed-citation xml:lang="en">Bay G., Lee C., Chen C., Mahal N.K. et al. Agricultural management affects the active rhizosphere bacterial community composition and nitrification. Msystems. 2021;6(5): e00651–21. https://doi.org/10.1128/mSystems.00651-21</mixed-citation></citation-alternatives></ref><ref id="cit21"><label>21</label><citation-alternatives><mixed-citation xml:lang="ru">Bonfante P., Venice F. Mucoromycota: going to the roots of plant-interacting fungi // Fungal Biology Reviews. – 2020. – Т. 34, № 2. – С. 100–113.</mixed-citation><mixed-citation xml:lang="en">Bonfante P., Venice F. Mucoromycota: going to the roots of plant-interacting fungi. Biology Reviews. 2020;34(2):100–113.</mixed-citation></citation-alternatives></ref><ref id="cit22"><label>22</label><citation-alternatives><mixed-citation xml:lang="ru">Challacombe J.F., Hesse C.N., Bramer L.M., McCue L.A., Lipton M., Purvine S., Nicora C., Gallegos-Graves L.V., Porras-Alfaro A., Kuske C.R. Genomes and secretomes of Ascomycota fungi reveal diverse functions in plant biomass decomposition and pathogenesis // BMC genomics. – 2019. – Т. 20, № 1. – С. 1–27.</mixed-citation><mixed-citation xml:lang="en">Challacombe J.F., Hesse C.N., Bramer L.M., McCue L.A. et al. Genomes and secretomes of Ascomycota fungi reveal diverse functions in plant biomass decomposition and pathogenesis. BMC Genomics. 2019;20(1):1–27.</mixed-citation></citation-alternatives></ref><ref id="cit23"><label>23</label><citation-alternatives><mixed-citation xml:lang="ru">Delgado-Baquerizo M. Microbial diversity drives multifunctionality in terrestrial ecosystems // Nature communications. – 2016. – Т. 7, № 1. – С. 10541.</mixed-citation><mixed-citation xml:lang="en">Delgado-Baquerizo M. Microbial diversity drives multifunctionality in terrestrial ecosystems. Nature Communications. 2016;7(1):10541.</mixed-citation></citation-alternatives></ref><ref id="cit24"><label>24</label><citation-alternatives><mixed-citation xml:lang="ru">Edgar R.C. Search and clustering orders of magnitude faster than BLAST // Bioinformatics. – 2010. – Т. 26, № 19. – С. 2460–2461.</mixed-citation><mixed-citation xml:lang="en">Edgar R.C. Search and clustering orders of magnitude faster than BLAST. Bioinformatics. 2010;26(19):2460–2461.</mixed-citation></citation-alternatives></ref><ref id="cit25"><label>25</label><citation-alternatives><mixed-citation xml:lang="ru">Egidi E., Delgado-Baquerizo M., Plett J.M., Wang J., Eldridge D.J., Bardgett R.D., Maestre F.T., Singh B.K. A few Ascomycota taxa dominate soil fungal communities worldwide // Nature communications. – 2019. – Т. 10, № 1. – С. 2369.</mixed-citation><mixed-citation xml:lang="en">Egidi E., Delgado-Baquerizo M., Plett J.M., Wang J. et al. A few Ascomycota taxa dominate soil fungal communities worldwide. Nature Communications. 2019;10(1):2369.</mixed-citation></citation-alternatives></ref><ref id="cit26"><label>26</label><citation-alternatives><mixed-citation xml:lang="ru">Frąc M., Hannula S.E., Bełka M., Jędryczka M. Fungal biodiversity and their role in soil health // Front. Microbial. – 2018. – Т. 9. – С. 707. Doi: 10.3389/fmicb.2018.00707.</mixed-citation><mixed-citation xml:lang="en">Frąc M., Hannula S.E., Bełka M., Jędryczka M. Fungal biodiversity and their role in soil health. Front. Microbial. 2018;9:707. https://doi.org/10.3389/fmicb.2018.00707</mixed-citation></citation-alternatives></ref><ref id="cit27"><label>27</label><citation-alternatives><mixed-citation xml:lang="ru">Frey B., Rime T., Phillips M., Stierli B., Hajdas I., Widmer F. Microbial M. diversity in European alpine permafrost and active layers // FEMS microbiology ecology. – 2016. – Т. 92, № 3. – С. fiw018.</mixed-citation><mixed-citation xml:lang="en">Frey B., Rime T., Phillips M., Stierli B. et al. Microbial diversity in European alpine permafrost and active layers. FEMS Microbiology Ecology. 2016;92(3): fiw018.</mixed-citation></citation-alternatives></ref><ref id="cit28"><label>28</label><citation-alternatives><mixed-citation xml:lang="ru">Graham E.B. et all. Microbes as Engines of Ecosystem Function: When Does Community Structure Enhance Predictions of Ecosystem Processes / E.B. Graham, J.E. Knelman, A. Schindlbacher, S. Siciliano, M. Breulmann, A. Yannare, J.M. Beman, G. Abe, L. Philippot, J. Prosser, A. Foulquier, J.C. Yuste, H.C. Glanville, D.L. Jones, R. Angel, J. Salminen, R.J. Newton, H. Bürgmann, L.J. Ingram, U. Hamer H.M.P. Siljanen K. Peltoniemi, K. Potthast, L. Bañeras, M. Hartmann, S. Banerjee, R. Yu, G. Nogaro, A. Richter, M. Koranda, S.C. Castle, M. Goberna, B. Song, A. Chatterjee, O.C. Nunes, A.R. Lopes, Y. Cao, A. Kaisermann, S. Hallin, M.S. Strickland, J. Garcia-Pausas J. Barba, H. Kang, K. Isobe, S. Papaspyrou, R. Pastorelli, A. Lagomarsino, E.S. Lindström, N. Basiliko, D.R. Nemergut // Front. Microbiol. Sec. Terrestrial Microbiology. – 2016. – 24 February. – Т. 7. – С. 214. https://doi.org/10.3389/fmicb.2016.00214.</mixed-citation><mixed-citation xml:lang="en">Graham E.B., Knelman J.E., Schindlbacher A., Siciliano S. et al. Microbes as Engines of Ecosystem Function: When Does Community Structure Enhance Predictions of Ecosystem Processes? Front. Microbiol., 24 February 2016: Sec. Terrestrial Microbiology. 2016;7:214. https://doi.org/10.3389/fmicb.2016.00214</mixed-citation></citation-alternatives></ref><ref id="cit29"><label>29</label><citation-alternatives><mixed-citation xml:lang="ru">Hartmann A., Schmid M., Van Tuinen D., Berg G. Plant-driven selection of microbes // Plant and Soil. – 2009. – Т. 321. – Pр. 235–257.</mixed-citation><mixed-citation xml:lang="en">Hartmann A., Schmid M., Van D. Tuinen, Berg G. Plant-driven selection of microbes. Plant and Soil. 2009;321:235–257</mixed-citation></citation-alternatives></ref><ref id="cit30"><label>30</label><citation-alternatives><mixed-citation xml:lang="ru">Hawksworth D.L., Lücking R. Fungal diversity revisited: 2.2 to 3.8 million species // Microbiology spectrum. – 2017. – Т. 5, № 4. – С. 10–1128.</mixed-citation><mixed-citation xml:lang="en">Hawksworth D.L., Lücking R. Fungal diversity revisited: 2.2 to 3.8 million species. Microbiology Spectrum. 2017;5(4):10–1128.</mixed-citation></citation-alternatives></ref><ref id="cit31"><label>31</label><citation-alternatives><mixed-citation xml:lang="ru">Klaubauf S., Inselsbacher E., Zechmeister-Boltenstern S., Wanek W., Gottsberger R., Strauss J. Molecular diversity of fungal communities in agricultural soils from lower Austria // Fungal Div. – 2010. – Т. 44. – С. 65–75. Doi: 10.1007/s13225–010–0053–1.</mixed-citation><mixed-citation xml:lang="en">Klaubauf S., Inselsbacher E., Zechmeister-Boltenstern S., Wanek W. et al. Molecular diversity of fungal communities in agricultural soils from lower Austria. Fungal Div. 2010;44:65–75. https://doi.org/10.1007/s13225-010-0053-1</mixed-citation></citation-alternatives></ref><ref id="cit32"><label>32</label><citation-alternatives><mixed-citation xml:lang="ru">Ling N., Wang T., Kuzyakov Y. Rhizosphere bacteriome structure and funtions // Nature Communications. – 2022. – Т. 13, № 1. – С. 836.</mixed-citation><mixed-citation xml:lang="en">Ling N., Wang T., Kuzyakov Y. Rhizosphere bacteriome structure and funtions. Nature Communications. 2022;13(1):836.</mixed-citation></citation-alternatives></ref><ref id="cit33"><label>33</label><citation-alternatives><mixed-citation xml:lang="ru">Magoč T., Salzberg S.L. FLASH: fast length adjustment of short reads to improve genome assemblies // Bioinformatics. – 2011. – Т. 27, № 21. – С. 2957–2963.</mixed-citation><mixed-citation xml:lang="en">Magoč T., Salzberg S.L. FLASH: fast length adjustment of short reads to improve genome assemblies. Bioinformatics. 2011;27(21):2957–2963.</mixed-citation></citation-alternatives></ref><ref id="cit34"><label>34</label><citation-alternatives><mixed-citation xml:lang="ru">Magurran A.E. Measuring biological diversity // Current Biology. – 2021. – Т. 31, № 19. – С. R1174-R1177.</mixed-citation><mixed-citation xml:lang="en">Magurran A.E. Measuring biological diversity. Current Biology. 2021;31(19): R1174-R1177.</mixed-citation></citation-alternatives></ref><ref id="cit35"><label>35</label><citation-alternatives><mixed-citation xml:lang="ru">Marschner P., Yang C.H., Lieberei R., Crowley D.E. Soil and plant specific effects on bacterial community composition in the rhizosphere // Soil biology and biochemistry. – 2001. – Т. 33, № 11. – С. 1437–1445.</mixed-citation><mixed-citation xml:lang="en">Marschner P., Yang C.H., Lieberei R., Crowley D.E. Soil and plant specific effects on bacterial community composition in the rhizosphere. Soil Biology and Biochemistry. 2001;33(11):1437–1445</mixed-citation></citation-alternatives></ref><ref id="cit36"><label>36</label><citation-alternatives><mixed-citation xml:lang="ru">Morgan J.A., Bending G.D., White P.J. Biological costs and benefits to plant – microbe interactions in the rhizosphere // Journal of experimental botany. – 2005. – Т. 56, № 417. – С. 1729–1739.</mixed-citation><mixed-citation xml:lang="en">Morgan J.A., Bending G.D., White P.J. Biological costs and benefits to plant–microbe interactions in the rhizosphere. Journal of Experimental Botany. 2005;56(417):1729–1739.</mixed-citation></citation-alternatives></ref><ref id="cit37"><label>37</label><citation-alternatives><mixed-citation xml:lang="ru">Navarro-Noya Y.E., Gómez-Acata S., Rojas-Valdez N. Relative impacts of tillage, residue management and crop-rotation on soil bacterial communities in a semi-arid agroecosystem // Soil Biology and Biochemistry. – 2013. – Т. 65. – С. 86–95.</mixed-citation><mixed-citation xml:lang="en">Navarro-Noya Y.E., Gómez-Acata S., Rojas-Valdez N. Relative impacts of tillage, residue management and crop-rotation on soil bacterial communities in a semi-arid agroecosystem. Soil Biology and Biochemistry. 2013;65:86–95.</mixed-citation></citation-alternatives></ref><ref id="cit38"><label>38</label><citation-alternatives><mixed-citation xml:lang="ru">Orrù L., Canfora L., Trinchera A., Migliore M., Pennelli B., Marcucci A., Farina R., Pinzari F. How tillage and crop rotation change the distribution pattern of fungi // Frontiers in Microbiology. – 2021. – С. 1469.</mixed-citation><mixed-citation xml:lang="en">Orrù L., Canfora L., Trinchera A., Migliore M. et al. How tillage and crop rotation change the distribution pattern of fungi. Frontiers in Microbiology. 2021:1469.</mixed-citation></citation-alternatives></ref><ref id="cit39"><label>39</label><citation-alternatives><mixed-citation xml:lang="ru">Prasad P.V., Bheemanahalli R., Jagadish S.K. Field crops and the fear of heat stress – opportunities, challenges and future directions // Field Crops Research. – 2017. – Т. 200. – С. 114–121.</mixed-citation><mixed-citation xml:lang="en">Prasad P.V., Bheemanahalli R., Jagadish S.K. Field crops and the fear of heat stress – opportunities, challenges and future directions. Field Crops Research. 2017;200:114–121.</mixed-citation></citation-alternatives></ref><ref id="cit40"><label>40</label><citation-alternatives><mixed-citation xml:lang="ru">Quesada-Moraga E., Garrido-Jurado I., González-Mas N., Yousef-Yousef M. Ecosystem services of entomopathogenic ascomycetes // Journal of Invertebrate Pathology. – 2023. – Т. 201. – С. 108015.</mixed-citation><mixed-citation xml:lang="en">Quesada-Moraga E., Garrido-Jurado I., González-Mas N., Yousef-Yousef M. Ecosystem services of entomopathogenic ascomycetes. Journal of Invertebrate Pathology. 2023;201:108015.</mixed-citation></citation-alternatives></ref><ref id="cit41"><label>41</label><citation-alternatives><mixed-citation xml:lang="ru">Reed H.E., Martiny J.B.H. Testing the functional significance of microbial composition in natural communities // FEMS microbiology ecology. – 2007. – Т. 62, № 2. – С. 161–170.</mixed-citation><mixed-citation xml:lang="en">Reed H.E., Martiny J.B.H. Testing the functional significance of microbial composition in natural communities. FEMS Microbiology Ecology. 2007;62(2):161–170.</mixed-citation></citation-alternatives></ref><ref id="cit42"><label>42</label><citation-alternatives><mixed-citation xml:lang="ru">Ritz K., Black H.I.J., Campbell C.D., Harris J.A., Wood C. Selecting biological indicators for monitoring soils: A framework for balancing scientific and technical opinion to assist policy development // Ecological Indicators. – 2009. – Vol. 9. – Pр. 1212–1221. https://doi.org/10.1016/j.ecolind.2009.02.009.</mixed-citation><mixed-citation xml:lang="en">Ritz K., Black H.I.J., Campbell C.D., Harris J.A., Wood C. Selecting biological indicators for monitoring soils: A framework for balancing scientific and technical opinion to assist policy development. Ecological Indicators. 2009;9:1212–1221. https://doi.org/10.1016/j.ecolind.2009.02.009</mixed-citation></citation-alternatives></ref><ref id="cit43"><label>43</label><citation-alternatives><mixed-citation xml:lang="ru">Servin J.A., Herbold C.W., Skophammer R.G., Lake J.A. Evidence excluding the root of the tree of life from the actinobacteria // Molecular biology and evolution. – 2008. – Т. 25, № 1. – С. 1–4.</mixed-citation><mixed-citation xml:lang="en">Servin J.A., Herbold C.W., Skophammer R.G., Lake J.A. Evidence excluding the root of the tree of life from the actinobacteria. Molecular Biology and Evolution. 2008;25(1):1–4.</mixed-citation></citation-alternatives></ref><ref id="cit44"><label>44</label><citation-alternatives><mixed-citation xml:lang="ru">Shu X., Zhang K., Zhang Q., Wang W. Changes in the composition of rhizosphere bacterial communities in response to soil types and acid rain // Journal of Environmental Management. – 2023. – Т. 325. – С. 116493.</mixed-citation><mixed-citation xml:lang="en">Shu X., Zhang K., Zhang Q., Wang W. Changes in the composition of rhizosphere bacterial communities in response to soil types and acid rain. Journal of Environmental Management. 2023;325:116493.</mixed-citation></citation-alternatives></ref><ref id="cit45"><label>45</label><citation-alternatives><mixed-citation xml:lang="ru">Shuming Mo. et all. Impacts of Crenarchaeota and Halobacterota on sulfate reduction in the subtropical mangrove ecosystem as revealed by SMDB analysis / Mo. Shuming Li. Jinhui, Li. Bin Yu. Ran, Nie. Shiqing, Zhang. Zufan, Kashif. Muhammad He. Sheng, Liao. Jianping, Jiang. Qiong, Shen. Peihong, Yan. Bing, Jiang. Chengjian // BioRxiv. – 2020. – С. 8. Doi: https://doi.org/10.1101/2020.08.16.252635.</mixed-citation><mixed-citation xml:lang="en">Shuming Mo. Jinhui Li, Bin Li, Ran Yu et al. Impacts of Crenarchaeota and Halobacterota on sulfate reduction in the subtropical mangrove ecosystem as revealed by SMDB analysis. BioRxiv. 2020:08. https://doi.org/10.1101/2020.08.16.252635</mixed-citation></citation-alternatives></ref><ref id="cit46"><label>46</label><citation-alternatives><mixed-citation xml:lang="ru">Simon H.M., Jahn C.E., Bergerud L.T., Sliwinski M.K., Weimer P.J., Willis D.K., Goodman R.M. Cultivation of mesophilic soil crenarchaeotes in enrichment cultures from plant roots // Applied and Environmental Microbiology. – 2005. – Т. 71, № 8. – С. 4751–4760.</mixed-citation><mixed-citation xml:lang="en">Simon H.M., Jahn C.E., Bergerud L.T., Sliwinski M.K. et al. Cultivation of mesophilic soil crenarchaeotes in enrichment cultures from plant roots. Applied and Environmental Microbiology. 2005;71(8):4751–4760.</mixed-citation></citation-alternatives></ref><ref id="cit47"><label>47</label><citation-alternatives><mixed-citation xml:lang="ru">Sommermann L., Geistlinger J., Wibberg D., Deubel A., Zwanzig J., Babin D., Schlüter A., Schellenberg I. Fungal community profiles in agricultural soils of a long-term field trial under different tillage, fertilization and crop rotation conditions analyzed by high-throughput ITS-amplicon sequencing // PLOS ONE. – 2018. – Т. 13, № 4. – С. e0195345.</mixed-citation><mixed-citation xml:lang="en">Sommermann L., Geistlinger J., Wibberg D., Deubel A. et al. Fungal community profiles in agricultural soils of a long-term field trial under different tillage, fertilization and crop rotation conditions analyzed by high-throughput ITS-amplicon sequencing. PLOS ONE. 2018;13(4): e0195345.</mixed-citation></citation-alternatives></ref><ref id="cit48"><label>48</label><citation-alternatives><mixed-citation xml:lang="ru">Stromberger М. Fire vs. Metal: A Laboratory Study Demonstrating Microbial Responses to Soil Disturbances // Journal of Natural Resources and Life Sciences Education. – 2005. – Т. 34, № 1. – С. 1–7. https://doi.org/10.2134/jnrlse.2005.0001.</mixed-citation><mixed-citation xml:lang="en">Stromberger М. Fire vs. Metal: A Laboratory Study Demonstrating Microbial Responses to Soil Disturbances. Journal of Natural Resources and Life Sciences Education. 2005;34(1):1–7. https://doi.org/10.2134/jnrlse.2005.0001</mixed-citation></citation-alternatives></ref><ref id="cit49"><label>49</label><citation-alternatives><mixed-citation xml:lang="ru">Tedersoo L., Smith M.E. Lineages of ectomycorrhizal fungi revisited: Foraging strategies and novel lineages revealed by sequences from belowground // Fungal Biology Reviews. – 2013. – Т. 27, № 3–4. – С. 83–99.</mixed-citation><mixed-citation xml:lang="en">Tedersoo L., Smith M.E. Lineages of ectomycorrhizal fungi revisited: Foraging strategies and novel lineages revealed by sequences from belowground. Fungal Biology Reviews. 2013;27(3–4):83–99.</mixed-citation></citation-alternatives></ref><ref id="cit50"><label>50</label><citation-alternatives><mixed-citation xml:lang="ru">Tedersoo L., Mikryukov V ., Anslan S., Bahram M., Khalid A.N., Adriana Corrales A. The Global Soil Mycobiome consortium dataset for boosting fungal diversity research // Fungal Diversity. – 2021. – Т. 111. – С. 573–588. https://doi.org/10.1007/s13225-021-00493-7.</mixed-citation><mixed-citation xml:lang="en">Tedersoo L., Mikryukov V., Anslan S., Bahram M. et al. The Global Soil Mycobiome consortium dataset for boosting fungal diversity research. Fungal Diversity. 2021;111:573–588. https://doi.org/10.1007/s13225-021-00493-7</mixed-citation></citation-alternatives></ref><ref id="cit51"><label>51</label><citation-alternatives><mixed-citation xml:lang="ru">Van Der Heijden M.G.A., Bardgett R.D., Van Straalen N.M. The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems // Ecology letters. – 2008. – Т. 11, № 3. – С. 296–310.</mixed-citation><mixed-citation xml:lang="en">Van Der Heijden M.G.A., Bardgett R.D., Van Straalen N.M. The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems. Ecology Letters. 2008;11(3):296–310.</mixed-citation></citation-alternatives></ref><ref id="cit52"><label>52</label><citation-alternatives><mixed-citation xml:lang="ru">Vancov T., Keen B. Amplification of soil fungal community DNA using the ITS86F and ITS4 primers // FEMS microbiology letters. – 2009. – Т. 296, № 1. – С. 91–96.</mixed-citation><mixed-citation xml:lang="en">Vancov T., Keen B. Amplification of soil fungal community DNA using the ITS86F and ITS4 primers. FEMS Microbiology Letters. 2009;296(1):91–96.</mixed-citation></citation-alternatives></ref><ref id="cit53"><label>53</label><citation-alternatives><mixed-citation xml:lang="ru">Vega F .E., Meyling N.V ., Luangsa-ard J.J., Blackwell M. Fungal Entomopathogens // Insect Pathology (Second Edition). – 2012. – С. 171–220.</mixed-citation><mixed-citation xml:lang="en">Vega F.E., Meyling N.V., Luangsa-ard J.J., Blackwell M. Fungal Entomopathogens. Insect Pathology (Second Edition). 2012:171–220.</mixed-citation></citation-alternatives></ref><ref id="cit54"><label>54</label><citation-alternatives><mixed-citation xml:lang="ru">Wang Q., Garrity G.M., Tiedje J.M., Cole J.R. Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy // Applied and environmental microbiology. – 2007. – Т. 73, № 16. – С. 5261–5267.</mixed-citation><mixed-citation xml:lang="en">Wang Q., Garrity G.M., Tiedje J.M., Cole J.R. Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Applied and Environmental Microbiology. 2007;73(16):5261–5267.</mixed-citation></citation-alternatives></ref><ref id="cit55"><label>55</label><citation-alternatives><mixed-citation xml:lang="ru">Zharkova E.K. et all. Bacterial communities of Lamiacea L. medical plants: structural features and rhizospyere effect / A.A. Vankova, O.V . Selitskaya, E.L. Malankina, N.V . Drenova, A.D. Zhelezova, Khlyustov V .K. S.L. Belopukhov, A.V . Zhevnerov, L.A. Sviridova, T.N. Fomina, A.V . Kozlov // Microorganisms. – 2023. – Т. 11, № 1. – С. 197.</mixed-citation><mixed-citation xml:lang="en">Zharkova E.K., Vankova A.A., Selitskaya O.V., Malankina E.L. et al. Bacterial communities of Lamiacea L. medical plants: structural features and rhizospyere effect. Microorganisms. 2023;11(1):197.</mixed-citation></citation-alternatives></ref></ref-list><fn-group><fn fn-type="conflict"><p>The authors declare that there are no conflicts of interest present.</p></fn></fn-group></back></article>
